FSL
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/ FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. Stands for: FMRIB (Oxford Centre for Functional Magnetic Resonance...
View ArticleRunning FSL on Ubuntu
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/Linux Add to end of .profile: . /etc/fsl/5.0/fsl.sh Save, log out and relog in (ssh -Y ) Type fsl to run
View ArticleFSL Manual
man fsl FSL requires a number of environment variables to be set properly. To achieve this, please source the config script from /etc/fsl/5.0/fsl.sh. One way to do this automatically is to add a line...
View ArticleRunning AFNI & FSL on same login
cat .bash_profile PATH=$PATH:/home/abin export PATH . /etc/fsl/5.0/fsl.sh In ~/.profile add these two lines at the bottom: . /etc/fsl/5.0/fsl.sh export PATH=”/home/abin:$PATH”
View ArticleFSL: Running Feat from Command Line
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FEAT/UserGuide “To call the FEAT GUI, either type Feat in a terminal (type Feat_gui on Mac or Windows), or run fsl and press the FEAT button.”
View ArticleYeti: Psych Software
/vega/psych/app yetipsych Dec 11 2013 afni yetipsych Dec 11 2013 art yetipsych Dec 20 2013 config yetipsych Dec 7 2013 freesurfer yetipsych Dec 6 2013 fsl yetipsych Dec 11 2013 install yetipsych Dec 3...
View ArticlePALM: Permutation Analysis of Linear Models
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/PALM/UserGuide Open Matlab Set Path: /usr/local/palm palm
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